PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008238828.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 641aa    MW: 71784.3 Da    PI: 5.9615
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008238828.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.71.2e-14442488455
                     HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     +h   ErrRR+++N++f  L++++P+ +      K +K++iL  A+eY+k+L+
  XP_008238828.1 442 NHALSERRRREKLNERFCVLKSMVPSiS------KDDKVSILDDAIEYLKDLE 488
                     7999**********************66......****************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142158.0E-5715198IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.514438487IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.03E-17440500IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.79E-14441492No hitNo description
PfamPF000103.8E-12442488IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.4E-18442499IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-13444493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009957Biological Processepidermal cell fate specification
GO:0010091Biological Processtrichome branching
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 641 aa     Download sequence    Send to blast
MATRLQNQDR VPENLRKQLA LAVRSIEWSY AIFWSISARQ PGVLEWGDGY YNGDIKTRKT  60
VQAIELNADQ MGLQRSEQLR ELYESLSAGE ASPQARRPSA SLSPEDLADT EWYYLVCMSF  120
VFNVGQGLPG RTLANGQPIW LCNAHYADSK VFTRSLLAKS ASIQTVVCFP FLGGVIELGV  180
TELVMEDPDL IQHVKTSFLE VPYHIASKKT NPSAGSTRND NDVACTVLDH DVMDTKLIPV  240
VGCEEMNVTS PNNSSNGLGL NKPADDSFMV EGMNGGASQV QSWQFMDDEF SNFVHHSMDS  300
SDCISQTLVY PEKVLLGPKA EKASDRCLHD LKERNSTKLT SLDPQSNDLQ YQSVLSVLLK  360
GSHQLILGPN FQNCHQESSF VSWKRGGFVK CRKQRGGSPQ KLLKQILFEV PRMHVDCVLE  420
CPEDNSNRNG VWRPEADEIG MNHALSERRR REKLNERFCV LKSMVPSISK DDKVSILDDA  480
IEYLKDLEKR VEELESCRET SDLEAKIKRK IQDTIERTSD NCCNTKISNG KKPLVYKRKA  540
SDIDETEPEI SYVVSKHGSS DNITVNMNNK DVLIEMKFPW REGVLLEIMD ATSRLQLDTH  600
SVQSSTAEGI LSVTIKSRFK GLTVASAGTI QQALQQIARS C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yz6_A8e-1971985192Transcription factor MYC3
4rs9_A8e-1971985192Transcription factor MYC3
4rqw_B8e-1971985192Transcription factor MYC3
4rqw_A8e-1971985192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1446451ERRRRE
2447452RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6894040.0KP689404.1 Prunus pseudocerasus isolate Unigene15653 bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008238828.10.0PREDICTED: transcription factor EGL1
SwissprotQ9FN690.0GL3_ARATH; Transcription factor GLABRA 3
TrEMBLA0A0U2RKD50.0A0A0U2RKD5_9R
STRINGPOPTR_0001s09450.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24443463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.10.0bHLH family protein